| Species | Brassica rapa |
| Assembly size (bp) | 262330601 |
| Scaffold N50 (bp) | 24553947 |
| Scaffold N90 (bp) | 19027318 |
| CC ratio (%) | 1.00 |
| Structural errors ratio (%) | 0 |
| Number of chromosomes | 11 |
| HiC Anchor rate (%) | 92.37 |
| Number of scaffolds | 11 |
| Longest scaffold (bp) | 34719908 |
| Scaffold L50 | 5 |
| Scaffold L90 | 10 |
| GC (%) | 35.09 |
AutoHiC Report
Report created at: Thu Jun 1 10:51:58 2023
Summary
Adjusting result
| Before adjustment | After adjustment |
|
|
Error adjustment
Translocation
Location: 21648009-21934703
Inversion
Location: 215442014-222116945
Debris
Location: 146416633-146434838
Additional information
| Species | Brassica rapa |
| Assembly size (bp) | 103370620 |
| Scaffold N50 (bp) | 342936 |
| Scaffold N90 (bp) | 72764 |
| CC ratio (%) | 85.18 |
| Structural errors ratio (%) | 0.06752238 |
| Number of chromosomes | 11 |
| Number of scaffolds | 937 |
| Longest scaffold (bp) | 2115976 |
| Scaffold L50 | 84 |
| Scaffold L90 | 333 |
| GC (%) | 45.47 |
| Error type | Error ratio(%) |
| Total error ratio | 0.06752238 |
| Inversion error ratio | 0.06457281 |
| Translocation error ratio | 0.00277346 |
| Debris error ratio | 0.00017611 |
| Error type | Translocation | Inversion | Debris | Total |
| 0.hic | 15 | 0 | 1 | 16 |
| 1.hic | 1 | 0 | 0 | 1 |
| 2.hic | 1 | 0 | 1 | 3 |
| 3.hic | 1 | 0 | 1 | 2 |
| 4.hic | 0 | 0 | 0 | 0 |
| Molecule | Length(bp) | GC(%) |
| All | 262330601 | 35.09 |
| Chromosome 1 | 29096201 | 33.34 |
| Chromosome 2 | 20030698 | 33.37 |
| Chromosome 3 | 26915038 | 33.83 |
| Chromosome 4 | 20539817 | 33.91 |
| Chromosome 5 | 24553947 | 33.82 |
| Chromosome 6 | 34719908 | 34.28 |
| Chromosome 7 | 17287781 | 34.57 |
| Chromosome 8 | 20321949 | 33.79 |
| Chromosome 9 | 25536935 | 33.99 |
| Chromosome 10 | 19027318 | 33.13 |
| Chromosome 11 | 24301009 | 33.79 |
