Report created at: Thu Jun 1 10:51:58 2023

Summary

Species Brassica rapa
Assembly size (bp) 262330601
Scaffold N50 (bp) 24553947
Scaffold N90 (bp) 19027318
CC ratio (%) 1.00
Structural errors ratio (%) 0
Number of chromosomes 11
HiC Anchor rate (%) 92.37
Number of scaffolds 11
Longest scaffold (bp) 34719908
Scaffold L50 5
Scaffold L90 10
GC (%) 35.09

Adjusting result

Before adjustment After adjustment

Error adjustment

Translocation
Location: 21648009-21934703
Inversion
Location: 215442014-222116945
Debris
Location: 146416633-146434838

Additional information

Before correcting

Species Brassica rapa
Assembly size (bp) 103370620
Scaffold N50 (bp) 342936
Scaffold N90 (bp) 72764
CC ratio (%) 85.18
Structural errors ratio (%) 0.06752238
Number of chromosomes 11
Number of scaffolds 937
Longest scaffold (bp) 2115976
Scaffold L50 84
Scaffold L90 333
GC (%) 45.47

Error ratio

Error type Error ratio(%)
Total error ratio 0.06752238
Inversion error ratio 0.06457281
Translocation error ratio 0.00277346
Debris error ratio 0.00017611

Number of error corrections

Error type Translocation Inversion Debris Total
0.hic 15 0 1 16
1.hic 1 0 0 1
2.hic 1 0 1 3
3.hic 1 0 1 2
4.hic 0 0 0 0

Chromosome length

Molecule Length(bp) GC(%)
All 262330601 35.09
Chromosome 1 29096201 33.34
Chromosome 2 20030698 33.37
Chromosome 3 26915038 33.83
Chromosome 4 20539817 33.91
Chromosome 5 24553947 33.82
Chromosome 6 34719908 34.28
Chromosome 7 17287781 34.57
Chromosome 8 20321949 33.79
Chromosome 9 25536935 33.99
Chromosome 10 19027318 33.13
Chromosome 11 24301009 33.79