Report created at: Thu Jun 1 10:51:58 2023
Summary
| Species |
Brassica rapa |
| Assembly size (bp) |
262330601 |
| Scaffold N50 (bp) |
24553947 |
| Scaffold N90 (bp) |
19027318 |
| CC ratio (%) |
1.00 |
| Structural errors ratio (%) |
0 |
| Number of chromosomes |
11 |
| HiC Anchor rate (%) |
92.37 |
| Number of scaffolds |
11 |
| Longest scaffold (bp) |
34719908 |
| Scaffold L50 |
5 |
| Scaffold L90 |
10 |
| GC (%) |
35.09 |
Adjusting result
| Before adjustment |
After adjustment |
|
|
Error adjustment
Translocation
Location: 21648009-21934703
Inversion
Location: 215442014-222116945
Debris
Location: 146416633-146434838
Additional information
Before correcting
| Species |
Brassica rapa |
| Assembly size (bp) |
103370620 |
| Scaffold N50 (bp) |
342936 |
| Scaffold N90 (bp) |
72764 |
| CC ratio (%) |
85.18 |
| Structural errors ratio (%) |
0.06752238 |
| Number of chromosomes |
11 |
| Number of scaffolds |
937 |
| Longest scaffold (bp) |
2115976 |
| Scaffold L50 |
84 |
| Scaffold L90 |
333 |
| GC (%) |
45.47 |
Error ratio
| Error type |
Error ratio(%) |
| Total error ratio |
0.06752238 |
| Inversion error ratio |
0.06457281 |
| Translocation error ratio |
0.00277346 |
| Debris error ratio |
0.00017611 |
Number of error corrections
| Error type |
Translocation |
Inversion |
Debris |
Total |
| 0.hic |
15 |
0 |
1 |
16 |
| 1.hic |
1 |
0 |
0 |
1 |
| 2.hic |
1 |
0 |
1 |
3 |
| 3.hic |
1 |
0 |
1 |
2 |
| 4.hic |
0 |
0 |
0 |
0 |
Chromosome length
| Molecule |
Length(bp) |
GC(%) |
| All |
262330601 |
35.09 |
| Chromosome 1 |
29096201 |
33.34 |
| Chromosome 2 |
20030698 |
33.37 |
| Chromosome 3 |
26915038 |
33.83 |
| Chromosome 4 |
20539817 |
33.91 |
| Chromosome 5 |
24553947 |
33.82 |
| Chromosome 6 |
34719908 |
34.28 |
| Chromosome 7 |
17287781 |
34.57 |
| Chromosome 8 |
20321949 |
33.79 |
| Chromosome 9 |
25536935 |
33.99 |
| Chromosome 10 |
19027318 |
33.13 |
| Chromosome 11 |
24301009 |
33.79 |